Helden Oligo-Analysis ( Motif Search)

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Time Complexity

$O(nm)$

Space Complexity

$O(m)$ words

(Derived: store number of occurances for each motif of a specified length)

Description

Uses oligonucleotides? Also only detects "short" motifs, and used for yeast

Approximate?

Exact

Randomized?

No, deterministic

Model of Computation

Word RAM

Year

1998

Reference

https://www.ncbi.nlm.nih.gov/pubmed/9719638